| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl21427 | Tox-GHH2 | WP_201093603.1 | DUF4150 domain-containing protein | CCR95_RS08760 | 388 | GCF_016653465.1 | unplaced scaffold | NZ_NHSQ01000070.1 | 20065 | 21231 | - |
| cl41764 | CdiA-CT_Ec_Kp-like | WP_244986582.1 | DUF6531 domain-containing protein | JJQ97_RS24060 | 1393 | GCF_016694755.2 | chromosome | NZ_CP068034.2 | 5619657 | 5623838 | + |
| cl16862 | AHH | WP_186160889.1 | AHH domain-containing protein | JKG63_RS05905 | 1496 | GCF_016698705.1 | chromosome | NZ_CP068049.1 | 1290736 | 1295226 | + |
| cl16881 | EndoU | WP_201446147.1 | filamentous hemagglutinin N-terminal domain-containing protein | JKG63_RS11950 | 5064 | GCF_016698705.1 | chromosome | NZ_CP068049.1 | 2727557 | 2742751 | - |
| cl16862 | AHH | WP_201674474.1 | DUF4157 domain-containing protein | JJ685_RS12100 | 900 | GCF_016722785.1 | unplaced scaffold | NZ_JAEQNE010000002.1 | 880994 | 883696 | + |
| cl00064 | Peptidase_M54 | WP_201674985.1 | DUF4157 domain-containing protein | JJ685_RS14540 | 537 | GCF_016722785.1 | unplaced scaffold | NZ_JAEQNE010000003.1 | 245144 | 246757 | + |
| cl16862 | AHH | WP_201675695.1 | LysM peptidoglycan-binding domain-containing protein | JJ685_RS18000 | 4436 | GCF_016722785.1 | unplaced scaffold | NZ_JAEQNE010000004.1 | 289290 | 302600 | + |
| cl41764 | CdiA-CT_Ec_Kp-like | WP_002994273.1 | RHS repeat-associated core domain-containing protein | I6J01_RS00060 | 312 | GCF_016725645.1 | chromosome | NZ_CP068084.1 | 8324 | 9262 | - |
| cl41780 | CDI_toxin_Bp_tRNase-like | WP_172462535.1 | DUF6443 domain-containing protein | I6J01_RS19205 | 1138 | GCF_016725645.1 | chromosome | NZ_CP068084.1 | 4577541 | 4580957 | + |
| cl30079 | OmpA_C-like | WP_201916681.1 | DUF4157 domain-containing protein | JJQ60_RS03545 | 558 | GCF_016735115.1 | unplaced scaffold | NZ_JAERQJ010000001.1 | 799024 | 800700 | + |