| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl30079 | OmpA_C-like | WP_201917274.1 | DUF4157 domain-containing protein | JJQ60_RS04855 | 644 | GCF_016735115.1 | unplaced scaffold | NZ_JAERQJ010000002.1 | 14727 | 16661 | - |
| cl00064 | Peptidase_M54 | WP_201918068.1 | EndoU domain-containing protein | JJQ60_RS06995 | 2080 | GCF_016735115.1 | unplaced scaffold | NZ_JAERQJ010000002.1 | 477510 | 483752 | - |
| cl21449 | Tox-HNH-EHHH | WP_201831827.1 | DUF6531 domain-containing protein | JK359_RS04440 | 1564 | GCF_016741775.1 | unplaced scaffold | NZ_JAERRK010000002.1 | 89768 | 94462 | + |
| cl16861 | LHH | WP_236678412.1 | sugar-binding protein | JK359_RS25100 | 2283 | GCF_016741775.1 | unplaced scaffold | NZ_JAERRK010000014.1 | 168584 | 175435 | + |
| cl39768 | CdiA-CT_Yk_RNaseA-like | WP_201843722.1 | WXG100 family type VII secretion target | JK359_RS35300 | 662 | GCF_016741775.1 | unplaced scaffold | NZ_JAERRK010000029.1 | 11636 | 13624 | + |
| cl12957 | Colicin_D | WP_236054059.1 | hypothetical protein | JK361_RS41670 | 227 | GCF_016741855.1 | unplaced scaffold | NZ_JAERRH010000022.1 | 9679 | 10362 | - |
| cl16881 | EndoU | WP_244667043.1 | hypothetical protein | HGK34_RS21505 | 526 | GCF_016742955.1 | unplaced scaffold | NZ_JABBYC010000088.1 | 898 | 2478 | - |
| cl21341 | Ntox43 | WP_202197304.1 | polymorphic toxin type 43 domain-containing protein | Sspor_RS01200 | 2453 | GCF_016755875.1 | unplaced scaffold | NZ_BNED01000003.1 | 15419 | 22780 | + |
| cl00212 | microbial_Rnases (Ribonuclease) | WP_237403955.1 | ricin-type beta-trefoil lectin domain protein | Sspor_RS21240 | 2430 | GCF_016755875.1 | unplaced scaffold | NZ_BNED01000005.1 | 4207821 | 4215113 | + |
| cl21406 | CdiA-CT_Ec_tRNase | WP_202201119.1 | polymorphic toxin type 28 domain-containing protein | Sspor_RS24990 | 1521 | GCF_016755875.1 | unplaced scaffold | NZ_BNED01000005.1 | 4988945 | 4993510 | - |