| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl00064 | Peptidase_M54 | WP_152538477.1 | hypothetical protein | Z054_RS0105430 | 1718 | GCF_000520995.1 | unplaced scaffold | NZ_JACA01000005.1 | 67514 | 72670 | + |
| cl00083 | HNHc (WHH) | WP_161635285.1 | HNH endonuclease | Z054_RS30205 | 1180 | GCF_000520995.1 | unplaced scaffold | NZ_JACA01000019.1 | 72447 | 75989 | - |
| cl41214 | CdiA-CT_Ec-like | WP_024771412.1 | DUF6443 domain-containing protein | Z054_RS0117880 | 3678 | GCF_000520995.1 | unplaced scaffold | NZ_JACA01000033.1 | 138235 | 149271 | + |
| cl00083 | HNHc (WHH) | WP_038291414.1 | HNH endonuclease | JCM21531_RS19050 | 251 | GCF_000521465.1 | unplaced scaffold | NZ_BAVR01000101.1 | 1 | 757 | + |
| cl01480 | DUF2235 | WP_158318685.1 | DUF2235 domain-containing protein | MIM_RS01840 | 1419 | GCF_000521505.1 | chromosome | NZ_CP003915.1 | 402505 | 406764 | - |
| cl00083 | HNHc (WHH) | WP_015433209.1 | HNH endonuclease | F542_RS02210 | 466 | GCF_000521725.1 | chromosome | NZ_CP006954.1 | 462855 | 464255 | + |
| cl21427 | Tox-GHH2 | WP_084615231.1 | DUF4150 domain-containing protein | RISW2_RS23875 | 452 | GCF_000521865.1 | unplaced scaffold | NZ_JAME01000004.1 | 17815 | 19173 | - |
| cl00083 | HNHc (WHH) | WP_158510941.1 | DUF6531 domain-containing protein | K788_RS09220 | 1185 | GCF_000522545.2 | chromosome | NZ_CP012746.1 | 2045471 | 2049028 | + |
| cl00083 | HNHc (WHH) | WP_035995337.1 | RHS domain-containing protein | K788_RS32400 | 1540 | GCF_000522545.2 | plasmid | NZ_CP012748.1 | 456733 | 461355 | + |
| cl41215 | CdiA-CT_5T87E_Ct | WP_081789208.1 | DUF6531 domain-containing protein | KALB_RS05745 | 1132 | GCF_000525635.1 | chromosome | NZ_CP007155.1 | 1223309 | 1226707 | + |