| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl30079 | OmpA_C-like | WP_203292786.1 | DUF4157 domain-containing protein | I4Q58_RS00865 | 604 | GCF_016827595.1 | unplaced scaffold | NZ_JAECMS010000001.1 | 185697 | 187511 | + |
| cl00083 | HNHc (WHH) | WP_236046573.1 | HNH endonuclease | JIG36_RS51725 | 1156 | GCF_016834655.1 | unplaced scaffold | NZ_JAENHP010000002.1 | 773149 | 776619 | + |
| cl30079 | OmpA_C-like | WP_189993248.1 | DUF4157 domain-containing protein | Srubr_RS02565 | 701 | GCF_016860525.1 | unplaced scaffold | NZ_BNEA01000001.1 | 531832 | 533937 | - |
| cl21330 | CdiA-CT_Ecl_RNase-like | WP_203855050.1 | DUF6531 domain-containing protein | Srubr_RS24635 | 1548 | GCF_016860525.1 | unplaced scaffold | NZ_BNEA01000015.1 | 2610781 | 2615427 | + |
| cl00173 | VIP2 | WP_204123126.1 | minor capsid protein | JUF03_RS10590 | 537 | GCF_016861765.1 | unplaced scaffold | NZ_BOLR01000023.1 | 46228 | 47841 | - |
| cl00083 | HNHc (WHH) | WP_203655380.1 | HNH endonuclease | Aru02nite_RS05270 | 2263 | GCF_016861975.1 | unplaced scaffold | NZ_BOMB01000005.1 | 1000 | 7791 | - |
| cl19110 | CDI_toxin_EC869_like | WP_184952006.1 | hypothetical protein | Aab01nite_RS43910 | 1403 | GCF_016861995.1 | unplaced scaffold | NZ_BOMC01000080.1 | 251982 | 256193 | - |
| cl39768 | CdiA-CT_Yk_RNaseA-like | WP_183218297.1 | hypothetical protein | Aca09nite_RS23465 | 2359 | GCF_016862035.1 | unplaced scaffold | NZ_BOME01000040.1 | 13085 | 20164 | - |
| cl41780 | CDI_toxin_Bp_tRNase-like | WP_239140345.1 | WXG100 family type VII secretion target | Aca07nite_RS12295 | 385 | GCF_016862055.1 | unplaced scaffold | NZ_BOMF01000046.1 | 2280 | 3437 | - |
| cl21406 | CdiA-CT_Ec_tRNase | WP_203807156.1 | polymorphic toxin type 28 domain-containing protein | Aco03nite_RS43140 | 2328 | GCF_016862075.1 | unplaced scaffold | NZ_BOMG01000105.1 | 110456 | 117442 | + |