| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl00212 | microbial_Rnases (Ribonuclease) | WP_205423846.1 | pre-toxin TG domain-containing protein | JTI59_RS12785 | 373 | GCF_016939435.1 | chromosome | NZ_CP070511.1 | 2501958 | 2503079 | - |
| cl00083 | HNHc (WHH) | WP_205651541.1 | HNH endonuclease | JYA52_RS02330 | 1053 | GCF_017052465.1 | unplaced scaffold | NZ_JAFHKT010000102.1 | 16614 | 19775 | + |
| cl21330 | CdiA-CT_Ecl_RNase-like | WP_206094164.1 | toxin C-terminal domain-containing protein | JSQ80_RS02075 | 2518 | GCF_017052585.1 | unplaced scaffold | NZ_JAFFHZ010000001.1 | 426643 | 434199 | - |
| cl26675 | COG5529 | WP_206097709.1 | Hint domain-containing protein | JSQ80_RS23155 | 426 | GCF_017052585.1 | unplaced scaffold | NZ_JAFFHZ010000001.1 | 5236176 | 5237456 | + |
| cl16862 | AHH | WP_205893788.1 | RHS domain-containing protein | IMW75_RS22280 | 664 | GCF_017114825.1 | unplaced scaffold | NZ_JADEVO010000039.1 | 46454 | 48450 | - |
| cl21449 | Tox-HNH-EHHH | WP_241028403.1 | HNH/endonuclease VII fold putative polymorphic toxin | IQ279_RS28130 | 604 | GCF_017114865.1 | unplaced scaffold | NZ_JADEYH010000018.1 | 114946 | 116760 | - |
| cl21405 | Ntox15 | WP_206252495.1 | polymorphic toxin type 15 domain-containing protein | JY500_RS11635 | 326 | GCF_017161445.1 | chromosome | NZ_CP071060.1 | 2577568 | 2578548 | + |
| cl41756 | PoNe | WP_201012687.1 | hypothetical protein | JSY30_RS02210 | 520 | GCF_017165745.1 | unplaced scaffold | NZ_JAFGZF010000001.1 | 505421 | 506983 | + |
| cl16544 | TNT | WP_206401236.1 | glycohydrolase toxin TNT-related protein | JSY30_RS05435 | 4552 | GCF_017165745.1 | unplaced scaffold | NZ_JAFGZF010000002.1 | 424139 | 437797 | + |
| cl21346 | Ntox50 | WP_206393978.1 | minor capsid protein | JRF95_RS26920 | 453 | GCF_017167025.1 | unplaced scaffold | NZ_JAFDQP010000029.1 | 2502 | 3863 | + |