| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl16862 | AHH | WP_202858156.1 | AHH domain-containing protein | JMN32_RS20060 | 2869 | GCF_016775155.1 | unplaced scaffold | NZ_JAEUGD010000064.1 | 266459 | 275068 | + |
| cl16870 | Toxin-deaminase | WP_202858158.1 | hypothetical protein | JMN32_RS20070 | 1252 | GCF_016775155.1 | unplaced scaffold | NZ_JAEUGD010000064.1 | 276371 | 280129 | + |
| cl16881 | EndoU | WP_202859182.1 | EndoU domain-containing protein | JMN32_RS25190 | 1526 | GCF_016775155.1 | unplaced scaffold | NZ_JAEUGD010000067.1 | 228791 | 233371 | - |
| cl00173 | VIP2 | WP_084230647.1 | minor capsid protein | I6I92_RS06715 | 546 | GCF_016791605.1 | unplaced scaffold | NZ_JAETXN010000001.1 | 1326900 | 1328540 | - |
| cl21440 | Tox-REase-5 | WP_230979448.1 | Tox-REase-5 domain-containing protein | JM946_RS05030 | 553 | GCF_016801985.1 | unplaced scaffold | NZ_JAEVLS010000001.1 | 1172612 | 1174273 | - |
| cl41214 | CdiA-CT_Ec-like | WP_225930335.1 | hypothetical protein | G9U55_RS30425 | 273 | GCF_016803985.1 | chromosome | NZ_CP049945.1 | 1971624 | 1972445 | - |
| cl01480 | DUF2235 | WP_223471245.1 | DUF2235 domain-containing protein | I4X03_RS22565 | 889 | GCF_016809835.1 | unplaced scaffold | NZ_JAFBIL020000012.1 | 22963 | 25632 | - |
| cl41756 | PoNe | WP_048402908.1 | hypothetical protein | GYN01_RS00195 | 478 | GCF_016812185.1 | unplaced scaffold | NZ_JAAEBV010000001.1 | 42373 | 43809 | + |
| cl07564 | Cytotoxic | WP_238936227.1 | colicin E3/pyocin S6 family cytotoxin | GYN01_RS11075 | 377 | GCF_016812185.1 | unplaced scaffold | NZ_JAAEBV010000003.1 | 91729 | 92862 | + |
| cl00083 | HNHc (WHH) | WP_203242962.1 | HNH endonuclease | JQV57_RS15980 | 284 | GCF_016814695.1 | unplaced scaffold | NZ_JAFBRL010000004.1 | 113321 | 114175 | - |