| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl21328 | Ntox17 | WP_246618129.1 | polymorphic toxin type 17 domain-containing protein | JBF12_RS01765 | 1409 | GCF_016103505.1 | unplaced scaffold | NZ_JAEEAQ010000008.1 | 17440 | 21669 | + |
| cl00064 | Peptidase_M54 | WP_198466764.1 | phage baseplate assembly protein V | I7X30_RS08665 | 1091 | GCF_016126035.1 | unplaced scaffold | NZ_JAEFDC010000006.1 | 122710 | 125985 | + |
| cl00064 | Peptidase_M54 | WP_225879558.1 | phage baseplate assembly protein V | I7X30_RS14230 | 802 | GCF_016126035.1 | unplaced scaffold | NZ_JAEFDC010000024.1 | 10832 | 13241 | - |
| cl21346 | Ntox50 | WP_131087472.1 | minor capsid protein | JC286_RS05460 | 450 | GCF_016126715.1 | chromosome | NZ_CP065921.1 | 1153204 | 1154556 | + |
| cl41764 | CdiA-CT_Ec_Kp-like | WP_082089687.1 | filamentous hemagglutinin N-terminal domain-containing protein | I6H84_RS24705 | 3955 | GCF_016127755.1 | chromosome | NZ_CP066038.1 | 1859106 | 1870973 | - |
| cl19110 | CDI_toxin_EC869_like | WP_198689438.1 | DUF637 domain-containing protein | H8A87_RS07915 | 1810 | GCF_016306625.1 | unplaced scaffold | NZ_JACOII010000031.1 | 48310 | 53742 | - |
| cl16862 | AHH | WP_232370254.1 | AHH domain-containing protein | H8A87_RS19940 | 205 | GCF_016306625.1 | unplaced scaffold | NZ_JACOII010000046.1 | 19894 | 20511 | - |
| cl16881 | EndoU | WP_198691546.1 | EndoU domain-containing protein | H8A87_RS19585 | 194 | GCF_016306625.1 | unplaced scaffold | NZ_JACOII010000102.1 | 1 | 587 | + |
| cl16544 | TNT | WP_198691550.1 | glycohydrolase toxin TNT-related protein | H8A87_RS19605 | 178 | GCF_016306625.1 | unplaced scaffold | NZ_JACOII010000103.1 | 1 | 538 | + |
| cl00083 | HNHc (WHH) | WP_198716606.1 | S-type pyocin domain-containing protein | YA0719_RS03365 | 755 | GCF_016307665.1 | unplaced scaffold | NZ_JAEIKQ010000008.1 | 38217 | 40484 | + |