| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl01480 | DUF2235 | WP_167863974.1 | DUF2235 domain-containing protein | FVB43_RS10780 | 617 | GCF_012271765.1 | unplaced scaffold | NZ_VRKO01000012.1 | 149009 | 150862 | - |
| cl16881 | EndoU | WP_167864370.1 | hemagglutinin repeat-containing protein | FVB43_RS17175 | 4028 | GCF_012271765.1 | unplaced scaffold | NZ_VRKO01000016.1 | 66350 | 78436 | + |
| cl00064 | Peptidase_M54 | WP_168238480.1 | phage baseplate assembly protein V | FOB44_RS10425 | 1076 | GCF_012273615.1 | chromosome | NZ_CP050995.1 | 2411522 | 2414752 | - |
| cl16625 | Tae4 | WP_228460392.1 | FG-GAP-like repeat-containing protein | FOB44_RS10690 | 2222 | GCF_012273615.1 | chromosome | NZ_CP050995.1 | 2465843 | 2472511 | - |
| cl00222 | Lyz-like | WP_168238819.1 | DUF4280 domain-containing protein | FOB44_RS13460 | 1356 | GCF_012273615.1 | chromosome | NZ_CP050995.1 | 3092528 | 3096598 | - |
| cl21425 | Tox-ART-HYD1 | WP_210429699.1 | polymorphic toxin-type HINT domain-containing protein | HFV08_RS00905 | 2344 | GCF_012273655.1 | unplaced scaffold | NZ_JAAWWP010000001.1 | 199181 | 206215 | - |
| cl00296 | Peptidase_C39_like | WP_052072675.1 | cysteine peptidase family C39 domain-containing protein | HF293_RS06680 | 1556 | GCF_012275065.1 | chromosome | NZ_CP051121.1 | 286965 | 291635 | - |
| cl00083 | HNHc (WHH) | WP_168674947.1 | HNH endonuclease | HBN54_RS19690 | 376 | GCF_012275535.1 | unplaced scaffold | NZ_JAAVTK010000016.1 | 9428 | 10558 | - |
| cl41756 | PoNe | WP_193447080.1 | DUF6531 domain-containing protein | EX191_RS02740 | 1461 | GCF_012275705.1 | unplaced scaffold | NZ_SHOE01000002.1 | 92431 | 96816 | - |
| cl00222 | Lyz-like | WP_168518961.1 | transglycosylase SLT domain-containing protein | HFP15_RS23880 | 379 | GCF_012328925.1 | unplaced scaffold | NZ_JAAXLS010000018.1 | 100222 | 101361 | + |