| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl07564 | Cytotoxic | WP_119759475.1 | hemagglutinin repeat-containing protein | D3876_RS02225 | 3327 | GCF_003590775.1 | unplaced scaffold | NZ_QYUM01000002.1 | 405353 | 415336 | + |
| cl16861 | LHH | WP_182912034.1 | hemagglutinin repeat-containing protein | D3876_RS15290 | 3470 | GCF_003590775.1 | unplaced scaffold | NZ_QYUM01000004.1 | 4457 | 14869 | + |
| cl16881 | EndoU | WP_147376736.1 | DUF6531 domain-containing protein | D3871_RS02390 | 1522 | GCF_003591035.1 | unplaced scaffold | NZ_QYUO01000001.1 | 489999 | 494567 | - |
| cl21342 | Ntox46 | WP_119768020.1 | PAAR domain-containing protein | D3871_RS05775 | 448 | GCF_003591035.1 | unplaced scaffold | NZ_QYUO01000001.1 | 1206338 | 1207684 | - |
| cl00083 | HNHc (WHH) | WP_119751562.1 | HNH endonuclease | D3P04_RS19615 | 298 | GCF_003591515.1 | unplaced scaffold | NZ_QZCG01000015.1 | 119214 | 120110 | - |
| cl00222 | Lyz-like | WP_119928814.1 | transglycosylase SLT domain-containing protein | D5H75_RS24180 | 365 | GCF_003594875.1 | unplaced scaffold | NZ_QZEY01000010.1 | 117639 | 118736 | + |
| cl21425 | Tox-ART-HYD1 | WP_119915845.1 | DUF6531 domain-containing protein | D5066_RS09985 | 1452 | GCF_003594915.1 | unplaced scaffold | NZ_QZCS01000005.1 | 84581 | 88939 | - |
| cl16881 | EndoU | WP_119916773.1 | hemagglutinin repeat-containing protein | D5066_RS18125 | 3407 | GCF_003594915.1 | unplaced scaffold | NZ_QZCS01000013.1 | 110287 | 120510 | + |
| cl00173 | VIP2 | WP_119937656.1 | PAAR domain-containing protein | D5067_RS09860 | 446 | GCF_003594935.2 | chromosome | NZ_CP043342.1 | 2068594 | 2069934 | + |
| cl21406 | CdiA-CT_Ec_tRNase | WP_120051163.1 | polymorphic toxin type 28 domain-containing protein | DWG14_RS16405 | 1566 | GCF_003595235.1 | chromosome | NZ_CP032427.1 | 3696973 | 3701673 | - |