| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl21328 | Ntox17 | WP_020871440.1 | polymorphic toxin type 17 domain-containing protein | D3C57_RS11355 | 1424 | GCF_003675955.1 | unplaced scaffold | NZ_QYCY01000001.1 | 2715256 | 2719530 | - |
| cl41780 | CDI_toxin_Bp_tRNase-like | WP_121935016.1 | hypothetical protein | EAH69_RS09740 | 443 | GCF_003687725.1 | unplaced scaffold | NZ_RDOJ01000013.1 | 13996 | 15327 | - |
| cl30079 | OmpA_C-like | WP_121907799.1 | DUF4157 domain-containing protein | BXY75_RS10995 | 556 | GCF_003688405.1 | unplaced scaffold | NZ_REFC01000013.1 | 480261 | 481931 | - |
| cl21449 | Tox-HNH-EHHH | WP_122399227.1 | DUF6531 domain-containing protein | EBN88_RS24435 | 1526 | GCF_003696235.1 | unplaced scaffold | NZ_RFFJ01000188.1 | 1952 | 6532 | + |
| cl41764 | CdiA-CT_Ec_Kp-like | WP_158675784.1 | PA14 domain-containing protein | EBN03_RS29850 | 2254 | GCF_003696265.1 | unplaced scaffold | NZ_RFFH01000021.1 | 5283 | 12047 | - |
| cl21441 | Tox-REase-7 | WP_245979030.1 | putative toxin | EBB59_RS04370 | 309 | GCF_003697345.1 | unplaced scaffold | NZ_RFLY01000005.1 | 1 | 932 | + |
| cl00083 | HNHc (WHH) | WP_166461951.1 | HNH endonuclease | C9E81_RS16570 | 597 | GCF_003697785.1 | unplaced scaffold | NZ_QOKZ01000006.1 | 304819 | 306612 | - |
| cl16862 | AHH | WP_122636216.1 | AHH domain-containing protein | D1631_RS09380 | 678 | GCF_003710065.1 | unplaced scaffold | NZ_QWIU01000002.1 | 2079888 | 2081924 | + |
| cl21334 | Ntox25 | WP_122888745.1 | hemagglutinin repeat-containing protein | EBO33_RS00865 | 3731 | GCF_003710245.1 | unplaced scaffold | NZ_RHDS01000001.1 | 199767 | 210962 | + |
| cl21494 | Abhydrolase | WP_010246049.1 | DUF4150 domain-containing protein | EBO33_RS04910 | 420 | GCF_003710245.1 | unplaced scaffold | NZ_RHDS01000002.1 | 9093 | 10355 | - |