| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl16881 | EndoU | WP_121643658.1 | T7SS effector LXG polymorphic toxin | D9779_RS20395 | 576 | GCF_003667885.1 | chromosome | NZ_CP033052.1 | 3938652 | 3940382 | - |
| cl00083 | HNHc (WHH) | WP_003504568.1 | HNH endonuclease | At12D1_RS23110 | 307 | GCF_003667905.1 | chromosome | NZ_CP033032.1 | 1742752 | 1743675 | + |
| cl21346 | Ntox50 | WP_080867318.1 | hemagglutinin repeat-containing protein | At12D1_RS24385 | 2334 | GCF_003667905.1 | chromosome | NZ_CP033032.1 | 2014538 | 2021542 | + |
| cl19110 | CDI_toxin_EC869_like | WP_158598497.1 | minor capsid protein | D8780_RS11720 | 464 | GCF_003668555.1 | unplaced scaffold | NZ_RCWN01000001.1 | 2459165 | 2460559 | - |
| cl41756 | PoNe | WP_121768960.1 | DUF4157 domain-containing protein | D7X96_RS03380 | 1186 | GCF_003668875.1 | unplaced scaffold | NZ_RAWM01000005.1 | 104337 | 107897 | - |
| cl21446 | Tox-WTIP | WP_158626595.1 | DUF4157 domain-containing protein | D7X96_RS17840 | 453 | GCF_003668875.1 | unplaced scaffold | NZ_RAWM01000043.1 | 26021 | 27382 | + |
| cl41756 | PoNe | WP_016714435.1 | hemagglutinin repeat-containing protein | CHR29_RS01205 | 2975 | GCF_003671975.1 | chromosome | NZ_CP022562.1 | 284315 | 293242 | + |
| cl21344 | Ntox47 | WP_121757641.1 | polymorphic toxin type 47 domain-containing protein | CHR29_RS11250 | 611 | GCF_003671975.1 | chromosome | NZ_CP022562.1 | 2381140 | 2382975 | - |
| cl00083 | HNHc (WHH) | WP_121812077.1 | DUF6443 domain-containing protein | EAH55_RS25145 | 1267 | GCF_003675385.1 | unplaced scaffold | NZ_RCWZ01000005.1 | 488904 | 492707 | - |
| cl21449 | Tox-HNH-EHHH | WP_020872325.1 | DUF6531 domain-containing protein | D3C57_RS06695 | 1489 | GCF_003675955.1 | unplaced scaffold | NZ_QYCY01000001.1 | 1695654 | 1700123 | + |