| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl41214 | CdiA-CT_Ec-like | WP_131732347.1 | sugar-binding protein | E1216_RS03405 | 2321 | GCF_900659625.1 | unplaced scaffold | NZ_CAACUZ010000003.1 | 145947 | 152912 | - |
| cl21425 | Tox-ART-HYD1 | WP_207401165.1 | Hint domain-containing protein | E1291_RS38350 | 253 | GCF_900659635.1 | unplaced scaffold | NZ_CAACVB010000381.1 | 2146 | 2907 | - |
| cl01480 | DUF2235 | WP_150547456.1 | type VI secretion system tip protein VgrG | PMYSY11_RS16440 | 1162 | GCF_900682675.2 | chromosome | NZ_LR215729.2 | 3529544 | 3533032 | - |
| cl00083 | HNHc (WHH) | WP_165450384.1 | HNH endonuclease | E0E43_RS17205 | 465 | GCF_900683625.1 | chromosome | NZ_LR215974.1 | 1667034 | 1668431 | + |
| cl16544 | TNT | WP_180145985.1 | glycohydrolase toxin TNT-related protein | MSL71_RS23580 | 879 | GCF_900699765.1 | unplaced scaffold | NZ_CAADHO010000012.1 | 161793 | 164432 | - |
| cl21427 | Tox-GHH2 | WP_054689817.1 | DUF4150 domain-containing protein | KJP83_RS03425 | 332 | GCF_901485605.1 | unplaced scaffold | NZ_CABEFZ010000017.1 | 15883 | 16881 | + |
| cl41780 | CDI_toxin_Bp_tRNase-like | WP_232069983.1 | carboxypeptidase regulatory-like domain-containing protein | SOIL9_RS23580 | 8113 | GCF_901538265.1 | chromosome | NZ_LR593886.1 | 5672966 | 5697307 | - |
| cl21330 | CdiA-CT_Ecl_RNase-like | WP_162655971.1 | toxin C-terminal domain-containing protein | GMBLW1_RS01085 | 233 | GCF_901538355.1 | chromosome | NZ_LR593887.1 | 287080 | 287781 | + |
| cl16862 | AHH | WP_162655973.1 | AHH domain-containing protein | GMBLW1_RS01095 | 1051 | GCF_901538355.1 | chromosome | NZ_LR593887.1 | 288344 | 291499 | + |
| cl16881 | EndoU | WP_235891802.1 | DUF637 domain-containing protein | FJI71_RS28990 | 1795 | GCF_901563875.1 | unplaced scaffold | NZ_CABEJC010000040.1 | 357329 | 362716 | + |