| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl00083 | HNHc (WHH) | WP_235715614.1 | HNH endonuclease | JCM9152_RS21725 | 597 | GCF_000513115.1 | unplaced scaffold | NZ_BAUU01000005.1 | 40988 | 42781 | + |
| cl39768 | CdiA-CT_Yk_RNaseA-like | WP_155255742.1 | hypothetical protein | B116_RS24985 | 1368 | GCF_000514815.1 | unplaced scaffold | NZ_AZWQ01000020.1 | 9129 | 13235 | + |
| cl12957 | Colicin_D | WP_188116019.1 | hypothetical protein | B116_RS25015 | 2285 | GCF_000514815.1 | unplaced scaffold | NZ_AZWQ01000020.1 | 204039 | 210896 | + |
| cl00083 | HNHc (WHH) | WP_211240082.1 | polymorphic toxin-type HINT domain-containing protein | PROKR_RS09305 | 2115 | GCF_000515355.1 | unplaced scaffold | NZ_KI911645.1 | 3970 | 10317 | + |
| cl16544 | TNT | WP_026473224.1 | phospholipase D-like domain-containing protein | ALKIM_RS0102200 | 1270 | GCF_000517065.1 | unplaced scaffold | NZ_KI912105.1 | 496681 | 500493 | + |
| cl00212 | microbial_Rnases (Ribonuclease) | WP_052345539.1 | FG-GAP-like repeat-containing protein | ALKIM_RS18450 | 1719 | GCF_000517065.1 | unplaced scaffold | NZ_KI912105.1 | 2905068 | 2910227 | - |
| cl41780 | CDI_toxin_Bp_tRNase-like | WP_162150082.1 | minor capsid protein | CYTFE_RS28645 | 328 | GCF_000517085.1 | unplaced scaffold | NZ_KI912107.1 | 2404914 | 2405900 | + |
| cl21444 | Tox-SHH | WP_025257862.1 | RHS domain-containing protein | BH81_RS00480 | 1560 | GCF_000517305.1 | chromosome | NZ_CP007039.1 | 91240 | 95922 | - |
| cl03449 | M35_like | WP_025258709.1 | toxin | BH81_RS05015 | 924 | GCF_000517305.1 | chromosome | NZ_CP007039.1 | 1104256 | 1107030 | + |
| cl16881 | EndoU | WP_025259970.1 | filamentous hemagglutinin N-terminal domain-containing protein | BH81_RS11705 | 4187 | GCF_000517305.1 | chromosome | NZ_CP007039.1 | 2649524 | 2662087 | + |