| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl21425 | Tox-ART-HYD1 | WP_011397344.1 | DUF6531 domain-containing protein | HCH_RS32430 | 1452 | GCF_000012985.1 | chromosome | NC_007645.1 | 3679637 | 3683995 | + |
| cl01480 | DUF2235 | WP_011584114.1 | DUF2235 domain-containing protein | CHU_RS03505 | 698 | GCF_000014145.1 | chromosome | NC_008255.1 | 810656 | 812752 | - |
| cl16544 | TNT | WP_011637809.1 | glycohydrolase toxin TNT-related protein | SFRI_RS12115 | 1494 | GCF_000014705.1 | chromosome | NC_008345.1 | 2802296 | 2806780 | - |
| cl41756 | PoNe | WP_011808064.1 | hypothetical protein | VEIS_RS01260 | 575 | GCF_000015565.1 | chromosome | NC_008786.1 | 277036 | 278763 | + |
| cl41756 | PoNe | WP_011808066.1 | hypothetical protein | VEIS_RS01270 | 581 | GCF_000015565.1 | chromosome | NC_008786.1 | 280268 | 282013 | + |
| cl41756 | PoNe | WP_011808068.1 | hypothetical protein | VEIS_RS01280 | 574 | GCF_000015565.1 | chromosome | NC_008786.1 | 283518 | 285242 | + |
| cl00083 | HNHc (WHH) | WP_238380304.1 | HNH endonuclease | STROP_RS05325 | 2256 | GCF_000016425.1 | chromosome | NC_009380.1 | 1194970 | 1201740 | + |
| cl01480 | DUF2235 | WP_012133137.1 | type VI secretion system tube protein Hcp | CKO_RS09680 | 661 | GCF_000018045.1 | chromosome | NC_009792.1 | 2120076 | 2122061 | + |
| cl01480 | DUF2235 | WP_012134636.1 | type VI secretion system tube protein Hcp | CKO_RS16530 | 660 | GCF_000018045.1 | chromosome | NC_009792.1 | 3597557 | 3599539 | - |
| cl07564 | Cytotoxic | WP_004178188.1 | colicin E3/pyocin S6 family cytotoxin | CKO_RS21940 | 561 | GCF_000018045.1 | plasmid | NC_009793.1 | 5566 | 7251 | - |