| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl00083 | HNHc (WHH) | WP_132623583.1 | polymorphic toxin-type HINT domain-containing protein | E1286_RS46130 | 1114 | GCF_004348995.1 | unplaced scaffold | NZ_SMKQ01000362.1 | 1412 | 4756 | - |
| cl00222 | Lyz-like | WP_132503921.1 | transglycosylase SLT domain-containing protein | E1294_RS02140 | 363 | GCF_004349015.1 | unplaced scaffold | NZ_SMKP01000004.1 | 62266 | 63357 | + |
| cl00222 | Lyz-like | WP_220447536.1 | WXG100 family type VII secretion target | E1294_RS03995 | 373 | GCF_004349015.1 | unplaced scaffold | NZ_SMKP01000007.1 | 95577 | 96698 | - |
| cl00222 | Lyz-like | WP_220448352.1 | hypothetical protein | E1294_RS47570 | 1939 | GCF_004349015.1 | unplaced scaffold | NZ_SMKP01000252.1 | 6942 | 12761 | - |
| cl00083 | HNHc (WHH) | WP_132166449.1 | HNH endonuclease | E1263_RS07535 | 2238 | GCF_004349055.1 | unplaced scaffold | NZ_SMKX01000015.1 | 15164 | 21880 | + |
| cl21449 | Tox-HNH-EHHH | WP_132168360.1 | hypothetical protein | E1263_RS16845 | 2248 | GCF_004349055.1 | unplaced scaffold | NZ_SMKX01000042.1 | 8034 | 14780 | - |
| cl16862 | AHH | WP_205728798.1 | AHH domain-containing protein | E0I26_RS11850 | 473 | GCF_004349195.1 | unplaced scaffold | NZ_SMLG01000009.1 | 1 | 1422 | + |
| cl00222 | Lyz-like | WP_132627804.1 | transglycosylase SLT domain-containing protein | E1295_RS01490 | 358 | GCF_004352805.1 | unplaced scaffold | NZ_SMLD01000002.1 | 91418 | 92494 | - |
| cl00222 | Lyz-like | WP_220448805.1 | transglycosylase SLT domain-containing protein | E1295_RS20185 | 361 | GCF_004352805.1 | unplaced scaffold | NZ_SMLD01000050.1 | 13297 | 14382 | - |
| cl19110 | CDI_toxin_EC869_like | WP_133190378.1 | filamentous hemagglutinin N-terminal domain-containing protein | E1N52_RS40245 | 3946 | GCF_004353905.1 | unplaced scaffold | NZ_SMOD01000066.1 | 10890 | 22730 | + |