| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl30079 | OmpA_C-like | WP_132820894.1 | DUF4157 domain-containing protein | E1283_RS27690 | 737 | GCF_004348415.1 | unplaced scaffold | NZ_SMKI01000384.1 | 4649 | 6862 | + |
| cl41214 | CdiA-CT_Ec-like | WP_132618765.1 | DUF6531 domain-containing protein | E1161_RS01540 | 1246 | GCF_004348445.1 | unplaced scaffold | NZ_SMKV01000002.1 | 14134 | 17874 | - |
| cl00296 | Peptidase_C39_like | WP_132404167.1 | C39 family peptidase | E1261_RS07835 | 1886 | GCF_004348455.1 | unplaced scaffold | NZ_SMKA01000020.1 | 25791 | 31451 | - |
| cl00083 | HNHc (WHH) | WP_132405080.1 | hypothetical protein | E1261_RS09960 | 683 | GCF_004348455.1 | unplaced scaffold | NZ_SMKA01000029.1 | 13062 | 15113 | - |
| cl19110 | CDI_toxin_EC869_like | WP_162605275.1 | hypothetical protein | E1212_RS03000 | 1285 | GCF_004348545.1 | unplaced scaffold | NZ_SMKL01000004.1 | 119519 | 123376 | - |
| cl00222 | Lyz-like | WP_132591099.1 | transglycosylase SLT domain-containing protein | E1292_RS01260 | 379 | GCF_004348685.1 | unplaced scaffold | NZ_SMKO01000002.1 | 65732 | 66871 | + |
| cl00222 | Lyz-like | WP_165974410.1 | transglycosylase SLT domain-containing protein | E1292_RS06210 | 367 | GCF_004348685.1 | unplaced scaffold | NZ_SMKO01000009.1 | 104656 | 105759 | + |
| cl16881 | EndoU | WP_132488981.1 | WXG100 family type VII secretion target | E1288_RS24745 | 589 | GCF_004348985.1 | unplaced scaffold | NZ_SMKW01000035.1 | 41743 | 43512 | - |
| cl16870 | Toxin-deaminase | WP_235884172.1 | DUF6531 domain-containing protein | E1288_RS41255 | 1135 | GCF_004348985.1 | unplaced scaffold | NZ_SMKW01000103.1 | 195 | 3602 | + |
| cl00222 | Lyz-like | WP_132611406.1 | transglycosylase SLT domain-containing protein | E1286_RS11130 | 372 | GCF_004348995.1 | unplaced scaffold | NZ_SMKQ01000023.1 | 4318 | 5436 | + |