| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl00064 | Peptidase_M54 | WP_130276797.1 | hypothetical protein | BC751_RS17775 | 245 | GCF_004216715.1 | unplaced scaffold | NZ_SGXG01000001.1 | 4141682 | 4142419 | + |
| cl01480 | DUF2235 | WP_165389922.1 | DUF2235 domain-containing protein | EV679_RS00745 | 1285 | GCF_004216755.1 | unplaced scaffold | NZ_SGWZ01000001.1 | 161532 | 165389 | + |
| cl01480 | DUF2235 | WP_130303223.1 | DUF2235 domain-containing protein | EV681_RS02405 | 1412 | GCF_004217095.1 | unplaced scaffold | NZ_SHKO01000001.1 | 538451 | 542689 | - |
| cl41780 | CDI_toxin_Bp_tRNase-like | WP_130510900.1 | hypothetical protein | EV385_RS20370 | 400 | GCF_004217545.1 | unplaced scaffold | NZ_SHKY01000001.1 | 4474316 | 4475518 | + |
| cl16544 | TNT | WP_130423925.1 | glycohydrolase toxin TNT-related protein | BDD14_RS26760 | 2469 | GCF_004217555.1 | unplaced scaffold | NZ_SHKW01000002.1 | 206111 | 213520 | - |
| cl16881 | EndoU | WP_130590488.1 | VENN motif pre-toxin domain-containing protein | EKN56_RS03185 | 460 | GCF_004295645.1 | chromosome | NZ_CP034752.1 | 805904 | 807286 | + |
| cl41756 | PoNe | WP_130599590.1 | contractile injection system protein, VgrG/Pvc8 family | EMK97_RS03805 | 1226 | GCF_004295665.1 | chromosome | NZ_CP034759.1 | 835937 | 839617 | + |
| cl41756 | PoNe | WP_246028872.1 | hypothetical protein | EMK97_RS19170 | 966 | GCF_004295665.1 | chromosome | NZ_CP034759.1 | 841262 | 844162 | + |
| cl21346 | Ntox50 | WP_227870454.1 | polymorphic toxin type 50 domain-containing protein | E0D90_RS23935 | 283 | GCF_004305975.1 | unplaced scaffold | NZ_BHZI01000382.1 | 1508 | 2359 | + |
| cl12957 | Colicin_D | WP_161972362.1 | hypothetical protein | EYE40_RS07480 | 2342 | GCF_004310685.1 | unplaced scaffold | NZ_SISG01000001.1 | 1545830 | 1552858 | - |