| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl16870 | Toxin-deaminase | WP_242980033.1 | hypothetical protein | BXY41_RS26985 | 914 | GCF_002934545.1 | unplaced scaffold | NZ_PTJA01000002.1 | 151614 | 154358 | + |
| cl00173 | VIP2 | WP_104437763.1 | minor capsid protein | BXY41_RS15445 | 546 | GCF_002934545.1 | unplaced scaffold | NZ_PTJA01000008.1 | 82215 | 83855 | - |
| cl03449 | M35_like | WP_104448304.1 | hypothetical protein | CD175_RS07165 | 928 | GCF_002934665.1 | unplaced scaffold | NZ_NIRS01000002.1 | 290388 | 293174 | - |
| cl38918 | Peptidase_M15 | WP_104588391.1 | D-Ala-D-Ala carboxypeptidase family metallohydrolase | XmelCFBP4644_RS17090 | 302 | GCF_002940015.1 | unplaced scaffold | NZ_MDEH01000012.1 | 47314 | 48222 | - |
| cl41764 | CdiA-CT_Ec_Kp-like | WP_244181116.1 | hemagglutinin repeat-containing protein | XmelCFBP4644_RS19730 | 1509 | GCF_002940015.1 | unplaced scaffold | NZ_MDEH01000017.1 | 69069 | 73598 | - |
| cl41780 | CDI_toxin_Bp_tRNase-like | WP_234006634.1 | VENN motif pre-toxin domain-containing protein | XsacCFBP4641_RS05980 | 528 | GCF_002940085.1 | unplaced scaffold | NZ_MDEK01000004.1 | 215358 | 216944 | - |
| cl21341 | Ntox43 | WP_104609499.1 | hemagglutinin repeat-containing protein | XsacCFBP4641_RS05990 | 4766 | GCF_002940085.1 | unplaced scaffold | NZ_MDEK01000004.1 | 219172 | 233472 | - |
| cl41214 | CdiA-CT_Ec-like | WP_079940559.1 | pre-toxin TG domain-containing protein | ERICIV_RS08350 | 231 | GCF_002951935.1 | chromosome | NZ_CP019659.1 | 1576097 | 1576792 | + |
| cl13533 | Colicin_E5 | WP_149867783.1 | pre-toxin TG domain-containing protein | ERICIV_RS08360 | 196 | GCF_002951935.1 | chromosome | NZ_CP019659.1 | 1577351 | 1577941 | + |
| cl21449 | Tox-HNH-EHHH | WP_158672749.1 | pre-toxin TG domain-containing protein | ERICIV_RS22890 | 244 | GCF_002951935.1 | chromosome | NZ_CP019659.1 | 1587084 | 1587818 | + |