| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl16881 | EndoU | WP_100160203.1 | EndoU domain-containing protein | CBE70_RS16640 | 391 | GCF_002777965.1 | unplaced scaffold | NZ_NGVR01000031.1 | 1697 | 2872 | - |
| cl39768 | CdiA-CT_Yk_RNaseA-like | WP_100201521.1 | hypothetical protein | CUT44_RS08225 | 421 | GCF_002794255.1 | unplaced scaffold | NZ_PGGW01000022.1 | 56752 | 58017 | + |
| cl21449 | Tox-HNH-EHHH | WP_100205508.1 | DUF6531 domain-containing protein | CUT44_RS32050 | 1559 | GCF_002794255.1 | unplaced scaffold | NZ_PGGW01000071.1 | 197475 | 202154 | + |
| cl41756 | PoNe | WP_100295274.1 | hypothetical protein | CUC53_RS17310 | 439 | GCF_002795305.1 | unplaced scaffold | NZ_PGGC01000198.1 | 792 | 2111 | + |
| cl21494 | Abhydrolase | WP_157807275.1 | DUF2974 domain-containing protein | CLV45_RS03960 | 485 | GCF_002797555.1 | unplaced scaffold | NZ_PGFA01000001.1 | 959127 | 960584 | - |
| cl16544 | TNT | WP_157807478.1 | glycohydrolase toxin TNT-related protein | CLV45_RS13555 | 417 | GCF_002797555.1 | unplaced scaffold | NZ_PGFA01000001.1 | 3208776 | 3210029 | - |
| cl00173 | VIP2 | WP_100426268.1 | minor capsid protein | BGX16_RS12085 | 890 | GCF_002797675.1 | unplaced scaffold | NZ_PGEX01000001.1 | 2599147 | 2601819 | + |
| cl19110 | CDI_toxin_EC869_like | WP_158216111.1 | starch-binding protein | CLV65_RS06185 | 1201 | GCF_002797875.1 | unplaced scaffold | NZ_PGFC01000004.1 | 172849 | 176454 | - |
| cl41764 | CdiA-CT_Ec_Kp-like | WP_100303411.1 | RHS repeat-associated core domain-containing protein | H171_RS00575 | 691 | GCF_002797975.1 | unplaced scaffold | NZ_PGET01000001.1 | 115229 | 117304 | + |
| cl16881 | EndoU | WP_157803869.1 | polymorphic toxin-type HINT domain-containing protein | CLV34_RS14510 | 596 | GCF_002798015.1 | unplaced scaffold | NZ_PGTZ01000011.1 | 222014 | 223804 | + |