| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl00212 | microbial_Rnases (Ribonuclease) | WP_245915353.1 | hypothetical protein | ATK36_RS09555 | 219 | GCF_002564045.1 | unplaced scaffold | NZ_PDJK01000002.1 | 768169 | 768828 | - |
| cl00173 | VIP2 | WP_098511637.1 | hypothetical protein | ATK36_RS13305 | 695 | GCF_002564045.1 | unplaced scaffold | NZ_PDJK01000002.1 | 1576280 | 1578367 | + |
| cl16881 | EndoU | WP_051323530.1 | hemagglutinin repeat-containing protein | CRN84_RS11340 | 2839 | GCF_002591785.1 | unplaced scaffold | NZ_PDDX01000001.1 | 2606772 | 2615291 | - |
| cl00083 | HNHc (WHH) | WP_029093432.1 | DUF6531 domain-containing protein | CRN84_RS18965 | 1294 | GCF_002591785.1 | unplaced scaffold | NZ_PDDX01000001.1 | 4285939 | 4289823 | + |
| cl19110 | CDI_toxin_EC869_like | WP_172435787.1 | VENN motif pre-toxin domain-containing protein | CBG46_RS00145 | 720 | GCF_002591855.1 | unplaced scaffold | NZ_NHRD01000001.1 | 33049 | 35211 | - |
| cl16881 | EndoU | WP_099073744.1 | EndoU domain-containing protein | B6258_RS01150 | 571 | GCF_002607735.1 | unplaced scaffold | NZ_NBVR01000009.1 | 6690 | 8405 | - |
| cl38048 | Peptidase_M23 | WP_099068856.1 | peptidoglycan DD-metalloendopeptidase family protein | VF07_RS22835 | 929 | GCF_002608105.1 | unplaced scaffold | NZ_LAHB01000034.1 | 71489 | 74278 | + |
| cl00083 | HNHc (WHH) | WP_209280354.1 | DUF4157 domain-containing protein | CGL56_RS17295 | 897 | GCF_002631205.1 | unplaced scaffold | NZ_PDLO01000011.1 | 54731 | 57424 | + |
| cl00296 | Peptidase_C39_like | WP_099138452.1 | DUF637 domain-containing protein | Xsze_RS01125 | 456 | GCF_002632585.1 | unplaced scaffold | NZ_NIBV01000001.1 | 232003 | 233373 | + |
| cl00083 | HNHc (WHH) | WP_038236436.1 | PAAR domain-containing protein | Xsze_RS07335 | 1421 | GCF_002632585.1 | unplaced scaffold | NZ_NIBV01000001.1 | 1593717 | 1597982 | + |