| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl00083 | HNHc (WHH) | WP_082115794.1 | HNH endonuclease | WX88_RS29350 | 398 | GCF_000972495.1 | unplaced scaffold | NZ_LATM01000001.1 | 513813 | 515009 | + |
| cl41780 | CDI_toxin_Bp_tRNase-like | WP_052732324.1 | hypothetical protein | WX88_RS30720 | 406 | GCF_000972495.1 | unplaced scaffold | NZ_LATM01000001.1 | 1066422 | 1067642 | + |
| cl00083 | HNHc (WHH) | WP_052732393.1 | HNH endonuclease | WX88_RS29395 | 327 | GCF_000972495.1 | unplaced scaffold | NZ_LATM01000002.1 | 357216 | 358199 | - |
| cl00083 | HNHc (WHH) | WP_052732399.1 | HNH endonuclease | WX88_RS27265 | 394 | GCF_000972495.1 | unplaced scaffold | NZ_LATM01000002.1 | 393104 | 394288 | - |
| cl00083 | HNHc (WHH) | WP_231590655.1 | HNH endonuclease | WX88_RS07000 | 359 | GCF_000972495.1 | unplaced scaffold | NZ_LATM01000003.1 | 94017 | 95096 | + |
| cl21449 | Tox-HNH-EHHH | WP_156176014.1 | RHS domain-containing protein | WX88_RS08105 | 589 | GCF_000972495.1 | unplaced scaffold | NZ_LATM01000003.1 | 381245 | 383014 | - |
| cl16861 | LHH | WP_052732476.1 | DUF6531 domain-containing protein | WX88_RS27380 | 1440 | GCF_000972495.1 | unplaced scaffold | NZ_LATM01000003.1 | 383514 | 387836 | - |
| cl21405 | Ntox15 | WP_052732498.1 | polymorphic toxin type 15 domain-containing protein | WX88_RS28660 | 339 | GCF_000972495.1 | unplaced scaffold | NZ_LATM01000004.1 | 78786 | 79805 | - |
| cl00083 | HNHc (WHH) | WP_046244997.1 | HNH endonuclease | WX88_RS13910 | 385 | GCF_000972495.1 | unplaced scaffold | NZ_LATM01000010.1 | 43925 | 45082 | + |
| cl21405 | Ntox15 | WP_231590712.1 | polymorphic toxin type 15 domain-containing protein | WX88_RS29480 | 402 | GCF_000972495.1 | unplaced scaffold | NZ_LATM01000011.1 | 42548 | 43756 | - |