| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl00083 | HNHc (WHH) | WP_157879411.1 | DUF6531 domain-containing protein | XPG1_RS01070 | 1565 | GCF_000968175.1 | chromosome | NZ_FO704551.1 | 266281 | 270978 | + |
| cl21449 | Tox-HNH-EHHH | WP_231853028.1 | DUF6531 domain-containing protein | XPG1_RS14580 | 1544 | GCF_000968175.1 | chromosome | NZ_FO704551.1 | 3150877 | 3155511 | - |
| cl16862 | AHH | WP_231854459.1 | AHH domain-containing protein | XDD1_RS05130 | 1427 | GCF_000968195.1 | chromosome | NZ_FO704550.1 | 1086139 | 1090422 | - |
| cl39768 | CdiA-CT_Yk_RNaseA-like | WP_231854427.1 | RHS domain-containing protein | XDD1_RS20140 | 530 | GCF_000968195.1 | chromosome | NZ_FO704550.1 | 3916542 | 3918134 | - |
| cl16881 | EndoU | WP_084721066.1 | EndoU domain-containing protein | XDD1_RS17170 | 1587 | GCF_000968195.1 | chromosome | NZ_FO704550.1 | 3923195 | 3927958 | - |
| cl21346 | Ntox50 | WP_029159965.1 | polymorphic toxin type 50 domain-containing protein | Csca_RS06655 | 509 | GCF_000968375.1 | chromosome | NZ_CP009933.1 | 1534900 | 1536429 | + |
| cl24743 | DUF4923 | WP_014148423.1 | type VI secretion system tip protein VgrG | MEALZ_RS09560 | 710 | GCF_000968535.2 | chromosome | NC_016112.1 | 2238898 | 2241030 | + |
| cl21427 | Tox-GHH2 | WP_014148428.1 | DUF4150 domain-containing protein | MEALZ_RS09585 | 376 | GCF_000968535.2 | chromosome | NC_016112.1 | 2244196 | 2245326 | + |
| cl21494 | Abhydrolase | WP_046101656.1 | DUF4150 domain-containing protein | TN98_RS09350 | 432 | GCF_000969395.1 | unplaced scaffold | NZ_JXXL01000007.1 | 700501 | 701799 | + |
| cl21344 | Ntox47 | WP_235334541.1 | hypothetical protein | TN98_RS21375 | 151 | GCF_000969395.1 | unplaced scaffold | NZ_JXXL01000007.1 | 715775 | 716230 | + |