| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl21449 | Tox-HNH-EHHH | WP_209904545.1 | HNH/endonuclease VII fold putative polymorphic toxin | JOJ88_RS06530 | 1399 | GCF_017875755.1 | unplaced scaffold | NZ_JAGGMY010000001.1 | 1359800 | 1363999 | + |
| cl29459 | Glucosaminidase | WP_084875847.1 | type VI secretion system tip protein VgrG | JOJ88_RS18795 | 822 | GCF_017875755.1 | unplaced scaffold | NZ_JAGGMY010000001.1 | 4010352 | 4012820 | - |
| cl26675 | COG5529 | WP_158087459.1 | hemagglutinin repeat-containing protein | JOJ88_RS23065 | 3919 | GCF_017875755.1 | unplaced scaffold | NZ_JAGGMY010000002.1 | 444830 | 456589 | - |
| cl00083 | HNHc (WHH) | WP_244193738.1 | S-type pyocin domain-containing protein | JOJ88_RS30390 | 261 | GCF_017875755.1 | unplaced scaffold | NZ_JAGGMY010000004.1 | 155514 | 156299 | - |
| cl41214 | CdiA-CT_Ec-like | WP_209469248.1 | polymorphic toxin-type HINT domain-containing protein | JOF59_RS00425 | 2283 | GCF_017876255.1 | unplaced scaffold | NZ_JAGINS010000001.1 | 113814 | 120665 | - |
| cl21449 | Tox-HNH-EHHH | WP_244991260.1 | HNH/endonuclease VII fold putative polymorphic toxin | JOF41_RS37130 | 1150 | GCF_017876325.1 | unplaced scaffold | NZ_JAGINV010000001.1 | 3983356 | 3986808 | - |
| cl16881 | EndoU | WP_209637140.1 | EndoU domain-containing protein | JOF56_RS11645 | 548 | GCF_017876405.1 | unplaced scaffold | NZ_JAGINW010000001.1 | 2436003 | 2437649 | - |
| cl21439 | Tox-REase-3 | WP_245379702.1 | hypothetical protein | JOF56_RS18185 | 596 | GCF_017876405.1 | unplaced scaffold | NZ_JAGINW010000001.1 | 3830190 | 3831980 | + |
| cl16881 | EndoU | WP_209647040.1 | EndoU domain-containing protein | JOF56_RS53190 | 379 | GCF_017876405.1 | unplaced scaffold | NZ_JAGINW010000001.1 | 11872374 | 11873513 | - |
| cl16544 | TNT | WP_129182890.1 | glycohydrolase toxin TNT-related protein | JOF40_RS19360 | 4001 | GCF_017876595.1 | unplaced scaffold | NZ_JAGIOG010000001.1 | 3890985 | 3902990 | - |