| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl19110 | CDI_toxin_EC869_like | WP_203699097.1 | FG-GAP-like repeat-containing protein | Cco03nite_RS39150 | 2463 | GCF_016862635.1 | unplaced scaffold | NZ_BONI01000117.1 | 13033 | 20424 | + |
| cl00212 | microbial_Rnases (Ribonuclease) | WP_203846780.1 | hypothetical protein | Dsi01nite_RS15225 | 1591 | GCF_016862795.1 | unplaced scaffold | NZ_BONQ01000047.1 | 148380 | 153155 | - |
| cl16881 | EndoU | WP_239066651.1 | EndoU domain-containing protein | Dac01nite_RS11870 | 365 | GCF_016862815.1 | unplaced scaffold | NZ_BONR01000007.1 | 4647 | 5744 | + |
| cl21444 | Tox-SHH | WP_203906742.1 | IPT/TIG domain-containing protein | Rhe02_RS04345 | 2571 | GCF_016862955.1 | unplaced scaffold | NZ_BONY01000004.1 | 78051 | 85766 | + |
| cl41780 | CDI_toxin_Bp_tRNase-like | WP_203908961.1 | pre-toxin TG domain-containing protein | Rhe02_RS15730 | 305 | GCF_016862955.1 | unplaced scaffold | NZ_BONY01000016.1 | 142188 | 143105 | + |
| cl02411 | RES | WP_203910907.1 | FG-GAP-like repeat-containing protein | Rhe02_RS25665 | 4031 | GCF_016862955.1 | unplaced scaffold | NZ_BONY01000033.1 | 64368 | 76463 | + |
| cl21440 | Tox-REase-5 | WP_239124052.1 | Tox-REase-5 domain-containing protein | Rhe02_RS49995 | 325 | GCF_016862955.1 | unplaced scaffold | NZ_BONY01000034.1 | 31100 | 32077 | - |
| cl21328 | Ntox17 | WP_204059222.1 | polymorphic toxin type 17 domain-containing protein | Mco01_RS24325 | 606 | GCF_016863035.1 | unplaced scaffold | NZ_BOOC01000027.1 | 4987 | 6807 | + |
| cl00222 | Lyz-like | WP_204051673.1 | transglycosylase SLT domain-containing protein | Msi02_RS32235 | 375 | GCF_016863095.1 | unplaced scaffold | NZ_BOOF01000043.1 | 31496 | 32623 | + |
| cl41215 | CdiA-CT_5T87E_Ct | WP_239321264.1 | hypothetical protein | Ppa06_RS33940 | 1949 | GCF_016863215.1 | unplaced scaffold | NZ_BOOL01000086.1 | 952 | 6801 | - |