| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl00173 | VIP2 | WP_081580741.1 | minor capsid protein | HMPREF9706_RS08840 | 508 | GCF_000301035.1 | unplaced scaffold | NZ_JH932292.1 | 779967 | 781493 | - |
| cl00083 | HNHc (WHH) | WP_017472969.1 | T7SS effector LXG polymorphic toxin | B494_RS20215 | 599 | GCF_000306965.1 | unplaced scaffold | NZ_JH976438.1 | 195227 | 197026 | + |
| cl12957 | Colicin_D | WP_051027029.1 | DUF6531 domain-containing protein | ON26_RS13710 | 1517 | GCF_000308595.1 | unplaced scaffold | NZ_BAGA01000077.1 | 266593 | 271146 | - |
| cl21425 | Tox-ART-HYD1 | WP_245548273.1 | hypothetical protein | ON34_RS37890 | 223 | GCF_000308755.1 | unplaced scaffold | NZ_BAGF01000148.1 | 10407 | 11078 | - |
| cl01480 | DUF2235 | WP_245537122.1 | DUF6531 domain-containing protein | C665_RS02035 | 1852 | GCF_000310185.1 | unplaced scaffold | NZ_AMXD01000004.1 | 58284 | 63842 | + |
| cl30079 | OmpA_C-like | WP_004328429.1 | DUF4157 domain-containing protein | C665_RS19320 | 710 | GCF_000310185.1 | unplaced scaffold | NZ_AMXD01000254.1 | 103 | 2237 | - |
| cl30079 | OmpA_C-like | WP_004388124.1 | DUF4157 domain-containing protein | C667_RS22810 | 434 | GCF_000310225.1 | unplaced scaffold | NZ_AMXF01000436.1 | 1 | 1305 | + |
| cl21346 | Ntox50 | WP_019134795.1 | minor capsid protein | HGKM_RS08385 | 338 | GCF_000311985.1 | unplaced scaffold | NZ_HE978586.1 | 254657 | 255673 | - |
| cl41756 | PoNe | WP_019187260.1 | DUF4280 domain-containing protein | BN93_RS05070 | 450 | GCF_000312305.1 | unplaced scaffold | NZ_HE999445.1 | 184249 | 185601 | - |
| cl16881 | EndoU | WP_019211915.1 | hemagglutinin repeat-containing protein | BN68_RS14645 | 2998 | GCF_000312485.1 | unplaced scaffold | NZ_HE997645.1 | 472071 | 481067 | - |