| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl07564 | Cytotoxic | WP_158631432.1 | RHS repeat-associated core domain-containing protein | ECE50_RS30795 | 1469 | GCF_003994345.2 | unplaced scaffold | NZ_RIAR02000001.1 | 159152 | 163561 | + |
| cl16870 | Toxin-deaminase | WP_127192130.1 | pre-toxin TG domain-containing protein | EJP82_RS11210 | 692 | GCF_003994475.1 | unplaced scaffold | NZ_RZNY01000007.1 | 227050 | 229128 | - |
| cl21328 | Ntox17 | WP_127195255.1 | polymorphic toxin type 17 domain-containing protein | EJP82_RS27430 | 1871 | GCF_003994475.1 | unplaced scaffold | NZ_RZNY01000064.1 | 2458 | 8073 | + |
| cl41215 | CdiA-CT_5T87E_Ct | WP_238160820.1 | DUF6443 domain-containing protein | D0817_RS05105 | 1220 | GCF_003996965.1 | unplaced scaffold | NZ_QWDM01000003.1 | 74793 | 78455 | + |
| cl41764 | CdiA-CT_Ec_Kp-like | WP_127340874.1 | hypothetical protein | D0817_RS23995 | 3281 | GCF_003996965.1 | unplaced scaffold | NZ_QWDM01000027.1 | 6107 | 15952 | + |
| cl16625 | Tae4 | WP_205701971.1 | RHS repeat-associated core domain-containing protein | EFO84_RS11720 | 271 | GCF_003999375.1 | unplaced scaffold | NZ_RJLC01000017.1 | 1 | 816 | + |
| cl21449 | Tox-HNH-EHHH | WP_127560038.1 | DUF6531 domain-containing protein | EP166_RS19035 | 1753 | GCF_004000275.1 | unplaced scaffold | NZ_RCIP01000005.1 | 301517 | 306778 | - |
| cl00173 | VIP2 | WP_164819492.1 | minor capsid protein | PCH02S_RS09595 | 538 | GCF_004000765.1 | unplaced scaffold | NZ_BILW01000005.1 | 314662 | 316278 | + |
| cl19110 | CDI_toxin_EC869_like | WP_127531736.1 | hypothetical protein | PKO01S_RS12790 | 1637 | GCF_004000825.1 | unplaced scaffold | NZ_BILZ01000018.1 | 74063 | 78976 | + |
| cl16862 | AHH | WP_127580752.1 | polymorphic toxin-type HINT domain-containing protein | PKO02S_RS07885 | 716 | GCF_004000845.1 | unplaced scaffold | NZ_BIMA01000017.1 | 8382 | 10532 | - |