| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl00064 | Peptidase_M54 | WP_121356788.1 | hypothetical protein | D6024_RS21030 | 413 | GCF_003628535.1 | unplaced scaffold | NZ_RBCI01000011.1 | 71371 | 72612 | + |
| cl21440 | Tox-REase-5 | WP_246001869.1 | Tox-REase-5 domain-containing protein | BDD43_RS14580 | 293 | GCF_003633615.1 | unplaced scaffold | NZ_RBKU01000001.1 | 3356781 | 3357662 | + |
| cl00083 | HNHc (WHH) | WP_121199636.1 | DUF6443 domain-containing protein | BDD43_RS21435 | 1747 | GCF_003633615.1 | unplaced scaffold | NZ_RBKU01000001.1 | 4813392 | 4818635 | + |
| cl38918 | Peptidase_M15 | WP_121200142.1 | hypothetical protein | BDD43_RS22995 | 243 | GCF_003633615.1 | unplaced scaffold | NZ_RBKU01000001.1 | 5183423 | 5184154 | - |
| cl16544 | TNT | WP_170152067.1 | glycohydrolase toxin TNT-related protein | C8E02_RS00685 | 389 | GCF_003633895.1 | unplaced scaffold | NZ_RBID01000001.1 | 132003 | 133172 | - |
| cl01480 | DUF2235 | WP_120816590.1 | type VI secretion system tube protein Hcp | C7387_RS09910 | 661 | GCF_003634235.1 | unplaced scaffold | NZ_RBIZ01000003.1 | 2022260 | 2024245 | + |
| cl41764 | CdiA-CT_Ec_Kp-like | WP_244922372.1 | hemagglutinin repeat-containing protein | C7387_RS11800 | 3734 | GCF_003634235.1 | unplaced scaffold | NZ_RBIZ01000004.1 | 76008 | 87212 | - |
| cl16881 | EndoU | WP_121144458.1 | hemagglutinin repeat-containing protein | DES39_RS04035 | 2608 | GCF_003634275.1 | unplaced scaffold | NZ_RBWY01000001.1 | 875120 | 882946 | - |
| cl21427 | Tox-GHH2 | WP_170164818.1 | DUF4150 domain-containing protein | BDD21_RS27960 | 357 | GCF_003634315.1 | unplaced scaffold | NZ_RBXL01000001.1 | 4155186 | 4156259 | + |
| cl21330 | CdiA-CT_Ecl_RNase-like | WP_022600417.1 | toxin C-terminal domain-containing protein | BC742_RS13870 | 331 | GCF_003634345.1 | unplaced scaffold | NZ_RBXN01000002.1 | 382292 | 383287 | + |