| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl39768 | CdiA-CT_Yk_RNaseA-like | WP_114881975.1 | DUF6531 domain-containing protein | DLD99_RS09200 | 1547 | GCF_003352185.1 | chromosome | NZ_CP029608.1 | 1967480 | 1972123 | + |
| cl00083 | HNHc (WHH) | WP_114881986.1 | S-type pyocin domain-containing protein | DLD99_RS09275 | 623 | GCF_003352185.1 | chromosome | NZ_CP029608.1 | 1985721 | 1987592 | + |
| cl16862 | AHH | WP_114882426.1 | RHS domain-containing protein | DLD99_RS12430 | 1568 | GCF_003352185.1 | chromosome | NZ_CP029608.1 | 2732418 | 2737124 | + |
| cl01480 | DUF2235 | WP_114886388.1 | type VI secretion system tip protein VgrG | DLD99_RS28415 | 1119 | GCF_003352185.1 | chromosome | NZ_CP029608.1 | 6184038 | 6187397 | + |
| cl21449 | Tox-HNH-EHHH | WP_244305979.1 | hemagglutinin repeat-containing protein | DLM46_RS40075 | 730 | GCF_003353175.1 | unplaced scaffold | NZ_QHKS01000004.1 | 152668 | 154860 | - |
| cl21427 | Tox-GHH2 | WP_162844338.1 | DUF4150 domain-containing protein | C8D90_RS00980 | 422 | GCF_003363015.1 | unplaced scaffold | NZ_QRAP01000001.1 | 221270 | 222538 | + |
| cl16862 | AHH | WP_115458349.1 | AHH domain-containing protein | C8D90_RS10250 | 1381 | GCF_003363015.1 | unplaced scaffold | NZ_QRAP01000004.1 | 179482 | 183627 | + |
| cl21427 | Tox-GHH2 | WP_162844409.1 | DUF4150 domain-containing protein | C8D90_RS14770 | 398 | GCF_003363015.1 | unplaced scaffold | NZ_QRAP01000007.1 | 4140 | 5336 | + |
| cl21441 | Tox-REase-7 | WP_158543288.1 | putative toxin | DWU99_RS13685 | 327 | GCF_003363265.1 | unplaced scaffold | NZ_QRBF01000005.1 | 94614 | 95597 | + |
| cl16861 | LHH | WP_233511183.1 | hypothetical protein | DWU99_RS16340 | 315 | GCF_003363265.1 | unplaced scaffold | NZ_QRBF01000006.1 | 228556 | 229503 | - |