| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl19110 | CDI_toxin_EC869_like | WP_235525564.1 | DUF637 domain-containing protein | AM629_RS20675 | 1112 | GCF_001280945.1 | unplaced scaffold | NZ_LJCS01000127.1 | 1 | 3336 | - |
| cl21346 | Ntox50 | WP_083448617.1 | minor capsid protein | ADM90_RS19355 | 511 | GCF_001281525.1 | unplaced scaffold | NZ_LGCI01000010.1 | 937084 | 938619 | - |
| cl21346 | Ntox50 | WP_053942354.1 | minor capsid protein | BN2373_RS01140 | 444 | GCF_001286805.1 | unplaced scaffold | NZ_CXYV01000001.1 | 236328 | 237662 | - |
| cl00222 | Lyz-like | WP_201782386.1 | PAAR domain-containing protein | WG78_RS22035 | 295 | GCF_001294205.1 | unplaced scaffold | NZ_LAQT01000004.1 | 60164 | 61051 | + |
| cl21440 | Tox-REase-5 | WP_053937413.1 | hemagglutinin repeat-containing protein | WG78_RS08635 | 1127 | GCF_001294205.1 | unplaced scaffold | NZ_LAQT01000007.1 | 4669 | 8052 | + |
| cl39768 | CdiA-CT_Yk_RNaseA-like | WP_245689152.1 | hypothetical protein | ADL29_RS44885 | 639 | GCF_001294335.1 | unplaced scaffold | NZ_LGKG01000013.1 | 92068 | 93987 | - |
| cl26675 | COG5529 | WP_245689331.1 | hypothetical protein | ADL29_RS11440 | 1175 | GCF_001294335.1 | unplaced scaffold | NZ_LGKG01000090.1 | 77252 | 80779 | + |
| cl41214 | CdiA-CT_Ec-like | WP_245689619.1 | RHS domain-containing protein | ADL29_RS45470 | 549 | GCF_001294335.1 | unplaced scaffold | NZ_LGKG01000149.1 | 54349 | 55998 | - |
| cl41756 | PoNe | WP_054114252.1 | DUF637 domain-containing protein | AC526_RS15955 | 1285 | GCF_001296225.1 | unplaced scaffold | NZ_LFYV01000049.1 | 8296 | 12153 | + |
| cl01480 | DUF2235 | WP_054179187.1 | type VI secretion system tube protein Hcp | AOY25_RS09590 | 661 | GCF_001297845.1 | unplaced scaffold | NZ_LIFU01000006.1 | 128718 | 130703 | - |