| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl01480 | DUF2235 | WP_238376592.1 | DUF2235 domain-containing protein | RG19_RS05655 | 589 | GCF_001482195.1 | unplaced scaffold | NZ_KQ759763.1 | 1381107 | 1382876 | - |
| cl16881 | EndoU | WP_083525686.1 | filamentous hemagglutinin N-terminal domain-containing protein | RD2015_RS24460 | 312 | GCF_001483865.1 | chromosome | NZ_CP013729.1 | 3698578 | 3699516 | - |
| cl41780 | CDI_toxin_Bp_tRNase-like | WP_197416676.1 | hemagglutinin repeat-containing protein | HRUBRI_RS25105 | 1435 | GCF_001483945.1 | chromosome | NZ_CP013737.1 | 1824884 | 1829191 | + |
| cl21405 | Ntox15 | WP_082686064.1 | polymorphic toxin type 15 domain-containing protein | HRUBRI_RS24460 | 373 | GCF_001483945.1 | chromosome | NZ_CP013737.1 | 3235595 | 3236716 | + |
| cl21330 | CdiA-CT_Ecl_RNase-like | WP_058897348.1 | hemagglutinin repeat-containing protein | HRUBRI_RS23575 | 2948 | GCF_001483945.1 | chromosome | NZ_CP013737.1 | 5468780 | 5477626 | - |
| cl21328 | Ntox17 | WP_058940973.1 | polymorphic toxin type 17 domain-containing protein | ATE80_RS05460 | 1185 | GCF_001484625.1 | unplaced scaffold | NZ_LNSV01000008.1 | 78261 | 81818 | - |
| cl39768 | CdiA-CT_Yk_RNaseA-like | WP_058943245.1 | hypothetical protein | ATE80_RS18030 | 999 | GCF_001484625.1 | unplaced scaffold | NZ_LNSV01000045.1 | 51197 | 54198 | - |
| cl21330 | CdiA-CT_Ecl_RNase-like | WP_058944476.1 | toxin C-terminal domain-containing protein | ATE80_RS24715 | 2342 | GCF_001484625.1 | unplaced scaffold | NZ_LNSV01000086.1 | 12723 | 19751 | + |
| cl16862 | AHH | WP_058910611.1 | PAAR domain-containing protein | AQ981_RS04810 | 1601 | GCF_001484765.1 | unplaced scaffold | NZ_KQ947377.1 | 344803 | 349608 | - |
| cl41215 | CdiA-CT_5T87E_Ct | WP_052350932.1 | DUF6531 domain-containing protein | AV140_RS35455 | 1540 | GCF_001485145.1 | unplaced scaffold | NZ_BCMN01000025.1 | 111433 | 116055 | - |