| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl39768 | CdiA-CT_Yk_RNaseA-like | WP_053255600.1 | DUF6531 domain-containing protein | CPH89_RS22165 | 1566 | GCF_900215245.1 | chromosome | NZ_LT907842.1 | 4721171 | 4725871 | - |
| cl00083 | HNHc (WHH) | WP_097132509.1 | HNH endonuclease | CRO54_RS12985 | 3855 | GCF_900215335.1 | unplaced scaffold | NZ_OCMT01000003.1 | 174808 | 186375 | + |
| cl38918 | Peptidase_M15 | WP_097047360.1 | DUF6443 domain-containing protein | CRO15_RS18555 | 1455 | GCF_900215465.1 | unplaced scaffold | NZ_OBEH01000008.1 | 32495 | 36862 | - |
| cl16870 | Toxin-deaminase | WP_141401270.1 | DUF637 domain-containing protein | CRO57_RS17735 | 2242 | GCF_900215605.1 | unplaced scaffold | NZ_OBEL01000004.1 | 389687 | 396415 | + |
| cl16862 | AHH | WP_245864773.1 | AHH domain-containing protein | CRO17_RS17745 | 586 | GCF_900215625.1 | unplaced scaffold | NZ_OBEK01000003.1 | 34605 | 36365 | - |
| cl00173 | VIP2 | WP_099950587.1 | minor capsid protein | CUU59_RS03340 | 521 | GCF_900215725.1 | unplaced scaffold | NZ_LT962469.1 | 695297 | 696862 | + |
| cl21427 | Tox-GHH2 | WP_051414532.1 | hypothetical protein | CRO06_RS20155 | 400 | GCF_900217905.1 | unplaced scaffold | NZ_OBMO01000032.1 | 35180 | 36382 | - |
| cl41756 | PoNe | WP_097151041.1 | T7SS effector LXG polymorphic toxin | CRO45_RS18135 | 554 | GCF_900220965.1 | unplaced scaffold | NZ_OBQC01000019.1 | 34491 | 36155 | - |
| cl00296 | Peptidase_C39_like | WP_099559162.1 | cysteine peptidase family C39 domain-containing protein | HDIA_RS24615 | 1530 | GCF_900231165.1 | plasmid | NZ_LT960615.1 | 23709 | 28301 | - |
| cl00083 | HNHc (WHH) | WP_102522493.1 | FG-GAP-like repeat-containing protein | VTAP4600_RS09010 | 2331 | GCF_900233005.1 | chromosome | NZ_LT960611.1 | 2014368 | 2021363 | - |