| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl16870 | Toxin-deaminase | WP_215607556.1 | hypothetical protein | IXB50_RS03530 | 527 | GCF_018739885.1 | unplaced scaffold | NZ_JADOES010000004.1 | 171389 | 172972 | + |
| cl30079 | OmpA_C-like | WP_215609713.1 | OmpA family protein | IXB50_RS14590 | 601 | GCF_018739885.1 | unplaced scaffold | NZ_JADOES010000030.1 | 22262 | 24067 | - |
| cl16881 | EndoU | WP_215774673.1 | DUF6531 domain-containing protein | E2R45_RS07475 | 1829 | GCF_018800825.1 | chromosome | NZ_CP037977.1 | 1627138 | 1632627 | - |
| cl19110 | CDI_toxin_EC869_like | WP_215796647.1 | hemagglutinin repeat-containing protein | JNO49_RS11655 | 3355 | GCF_018802645.1 | chromosome | NZ_CP069162.1 | 2535674 | 2545741 | + |
| cl41780 | CDI_toxin_Bp_tRNase-like | WP_246614799.1 | WXG100 family type VII secretion target | KOI35_RS44125 | 380 | GCF_018829635.1 | unplaced scaffold | NZ_JAHKKG010000020.1 | 110674 | 111816 | + |
| cl21406 | CdiA-CT_Ec_tRNase | WP_246589051.1 | hemagglutinin repeat-containing protein | Ga0466249_RS25140 | 3883 | GCF_018835585.1 | unplaced scaffold | NZ_JAHGVE010000048.1 | 2043 | 13694 | - |
| cl00222 | Lyz-like | WP_215916254.1 | transglycosylase SLT domain-containing protein | KO481_RS07485 | 373 | GCF_018860155.1 | unplaced scaffold | NZ_JAHKNI010000002.1 | 324682 | 325803 | - |
| cl00083 | HNHc (WHH) | WP_216061058.1 | RHS repeat-associated core domain-containing protein | KO496_RS12715 | 188 | GCF_018860945.1 | unplaced scaffold | NZ_JAHKQM010000018.1 | 217937 | 218503 | + |
| cl00083 | HNHc (WHH) | WP_216061065.1 | RHS repeat-associated core domain-containing protein | KO496_RS12750 | 311 | GCF_018860945.1 | unplaced scaffold | NZ_JAHKQM010000018.1 | 223113 | 224048 | + |
| cl00222 | Lyz-like | WP_187967316.1 | DUF4280 domain-containing protein | KN811_RS18875 | 1254 | GCF_018863395.1 | unplaced scaffold | NZ_JAHKRR010000010.1 | 1722 | 5486 | - |