| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl21449 | Tox-HNH-EHHH | WP_134456925.1 | HNH/endonuclease VII fold putative polymorphic toxin | E2553_RS09190 | 1384 | GCF_004402975.1 | unplaced scaffold | NZ_SNVI01000001.1 | 2059555 | 2063709 | - |
| cl00064 | Peptidase_M54 | WP_134466192.1 | matrixin family metalloprotease | E2553_RS40385 | 1446 | GCF_004402975.1 | unplaced scaffold | NZ_SNVI01000005.1 | 551825 | 556165 | - |
| cl21449 | Tox-HNH-EHHH | WP_229466752.1 | hypothetical protein | E1742_RS26765 | 362 | GCF_004421005.1 | chromosome | NZ_CP038026.1 | 2835916 | 2837004 | - |
| cl41756 | PoNe | WP_134386178.1 | hypothetical protein | E1742_RS17085 | 553 | GCF_004421005.1 | chromosome | NZ_CP038026.1 | 3906991 | 3908652 | + |
| cl41756 | PoNe | WP_134496552.1 | RHS domain-containing protein | E4K09_RS09785 | 996 | GCF_004458765.1 | unplaced scaffold | NZ_SPJX01000184.1 | 418725 | 421715 | + |
| cl21406 | CdiA-CT_Ec_tRNase | WP_167690176.1 | hypothetical protein | B5M42_RS04880 | 1922 | GCF_004514475.2 | unplaced scaffold | NZ_MYFO02000002.1 | 189192 | 194960 | + |
| cl16881 | EndoU | WP_134751511.1 | pre-toxin TG domain-containing protein | B5M42_RS11460 | 499 | GCF_004514475.2 | unplaced scaffold | NZ_MYFO02000005.1 | 179078 | 180577 | - |
| cl21346 | Ntox50 | WP_061268334.1 | polymorphic toxin type 50 domain-containing protein | E1O70_RS08250 | 2127 | GCF_004519295.1 | unplaced scaffold | NZ_SOZH01000004.1 | 526785 | 533168 | + |
| cl00222 | Lyz-like | WP_134727658.1 | transglycosylase SLT domain-containing protein | EIZ44_RS02955 | 380 | GCF_004522235.1 | unplaced scaffold | NZ_SDLT01000002.1 | 168327 | 169469 | - |
| cl16862 | AHH | WP_134729510.1 | DUF6531 domain-containing protein | EIZ44_RS16440 | 1494 | GCF_004522235.1 | unplaced scaffold | NZ_SDLT01000012.1 | 17005 | 21489 | + |