| Superfamily ID | Domain name | NCBI ID | Description | Gene name | Product length | Assembly | Seq type | Genomic accession | Start | End | Strand |
| cl00064 | Peptidase_M54 | WP_008201026.1 | DUF4157 domain-containing protein | ALPR1_RS20360 | 498 | GCF_000166275.1 | chromosome | NZ_CM001023.1 | 2878414 | 2879910 | - |
| cl00064 | Peptidase_M54 | WP_004347773.1 | type IV secretion protein Rhs | HMPREF0650_RS01620 | 709 | GCF_000177075.1 | unplaced scaffold | NZ_ADEG01000016.1 | 85868 | 87997 | - |
| cl00064 | Peptidase_M54 | WP_014373643.1 | YD repeat protein | SGRA_RS21150 | 514 | GCF_000250635.1 | chromosome | NC_016940.1 | 655621 | 657165 | - |
| cl00064 | Peptidase_M54 | WP_051336214.1 | DUF4280 domain-containing protein | H526_RS29455 | 568 | GCF_000430645.1 | unplaced scaffold | NZ_AUMK01000021.1 | 30709 | 32415 | + |
| cl00064 | Peptidase_M54 | WP_025740913.1 | hypothetical protein | DZ60_RS0104740 | 1826 | GCF_000520955.1 | unplaced scaffold | NZ_JACC01000007.1 | 27033 | 32513 | + |
| cl00064 | Peptidase_M54 | WP_152538477.1 | hypothetical protein | Z054_RS0105430 | 1718 | GCF_000520995.1 | unplaced scaffold | NZ_JACA01000005.1 | 67514 | 72670 | + |
| cl00064 | Peptidase_M54 | WP_131248740.1 | hypothetical protein | ATO12_RS00090 | 1918 | GCF_000626715.1 | unplaced scaffold | NZ_AQRA01000001.1 | 26653 | 32409 | + |
| cl00064 | Peptidase_M54 | WP_051882251.1 | RHS repeat-associated core domain-containing protein | IW15_RS22230 | 261 | GCF_000737705.1 | unplaced scaffold | NZ_JPRH01000013.1 | 4190 | 4975 | - |
| cl00064 | Peptidase_M54 | WP_051884841.1 | phage baseplate assembly protein V | IX38_RS22075 | 1109 | GCF_000737785.1 | unplaced scaffold | NZ_JPRO01000018.1 | 33360 | 36689 | + |
| cl00064 | Peptidase_M54 | WP_013995247.1 | hypothetical protein | ZOBGAL_RS18445 | 657 | GCF_000973105.1 | chromosome | NC_015844.1 | 4611702 | 4613675 | + |